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The third international hackathon for applying insights into large-scale genomic composition to use cases in a wide range of organisms

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dc.contributor.authorWalker, Kimberly
dc.contributor.authorKalra, Divya
dc.contributor.authorLowdon, Rebecca
dc.contributor.authorChen, Guangyi
dc.contributor.authorSedlazeck, Fritz J
dc.contributor.authorBusby, Ben
dc.contributor.authorMolik, David
dc.contributor.authorSoto, Daniela C.
dc.contributor.authorDabbaghie, Fawaz
dc.contributor.authorKhleifat, Ahmad Al
dc.contributor.authorMahmoud, Medhat
dc.contributor.authorPaulin, Luis F.
dc.date.accessioned2023-04-25T09:48:28Z
dc.date.available2023-04-25T09:48:28Z
dc.date.issued2022
dc.descriptionThis paper is submitted by the author of IIT (BHU), Varanasien_US
dc.description.abstractIn October 2021, 59 scientists from 14 countries and 13 U.S. states collaborated virtually in the Third Annual Baylor College of Medicine & DNANexus Structural Variation hackathon. The goal of the hackathon was to advance research on structural variants (SVs) by prototyping and iterating on open-source software. This led to nine hackathon projects focused on diverse genomics research interests, including various SV discovery and genotyping methods, SV sequence reconstruction, and clinically relevant structural variation, including SARS-CoV-2 variants. Repositories for the projects that participated in the hackathon are available at https://github.com/collaborativebioinformatics.en_US
dc.description.sponsorshipThe hackathon was sponsored by Pacific Biosciences of California, Inc. and Oxford Nanopore Technologies Limited. We'd like to thank Richard Gibbs and the Baylor College of Medicine Human Genome Sequencing Center for hosting the hackathon. Computation was performed on the DNAnexus platform, which donated compute and storage to the hackathon.en_US
dc.identifier.issn20461402
dc.identifier.urihttps://idr-sdlib.iitbhu.ac.in/handle/123456789/2257
dc.language.isoenen_US
dc.publisherF1000 Research Ltden_US
dc.relation.ispartofseriesF1000Research;Article number 530
dc.subjectCOVID-19en_US
dc.subjectGenomicsen_US
dc.subjectHumansen_US
dc.subjectSARS-CoV-2en_US
dc.subjectSoftwareen_US
dc.subjectArticle; bioinformatics; data processing; gene frequency; genetic variability; genetics; genomics; genotype; hackathon; high throughput sequencing; human; introgression; k mer; nonhuman; organisms; phenotype; Severe acute respiratory syndrome coronavirus 2; short tandem repeat; structural variant; tomato; virus DNA cell DNA interaction; genomics; softwareen_US
dc.titleThe third international hackathon for applying insights into large-scale genomic composition to use cases in a wide range of organismsen_US
dc.typeArticleen_US

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